Stem-loop crm-mir-2227

Accession

MI0011117

Description

Caenorhabditis remanei crm-mir-2227 precursor miRNA

Literature search

1 open access papers mention crm-mir-2227
(2 sentences)

Sequence

2064 reads, 17.0 reads per million, 9 experiments

ugcaggcggccugaugCCGUCUUUCAUCAACUUCCACUcguucacaugacaaaaaacagUGGCAGUGUUGAAAGACGUCaucagguuuguuuuacuuaaagcuugca
((((((((((((((((.(((((((((.((.((.(((((.(((............)))))))).)))).))))))))).))))))))).............)))))))

Structure

       -------------         C         U  A  U     c   cacau 
ugcaggc             ggccugaug CGUCUUUCA CA CU CCACU guu     g
|||||||             ||||||||| ||||||||| || || ||||| |||      
acguucg             uuggacuaC GCAGAAAGU GU GA GGUga caa     a
       aaauucauuuugu         U         U  -  C     -   aaaac 

Annotation confidence High

Genome context

Crem_Contig22: 610767-610873 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-2227

Mature crm-miR-2227-5p

• Accession: MIMAT0056879
• Description: Caenorhabditis remanei crm-miR-2227-5p mature miRNA
• Sequence: 17 - CCGUCUUUCAUCAACUUCCACU - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-2227-3p

• Accession: MIMAT0011624
• Description: Caenorhabditis remanei crm-miR-2227-3p mature miRNA
• Sequence: 60 - UGGCAGUGUUGAAAGACGUC - 79
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074