Stem-loop crm-mir-2228

Accession

MI0011118

Description

Caenorhabditis remanei crm-mir-2228 precursor miRNA

Sequence

781187 reads, 9484.0 reads per million, 9 experiments

gaucggugaguugaauuccauuuuugugucUAUUUUCCGAGCUGCGUUGACUgaaaagaauuucgagUCAUCCAUCUCUGAAAUUAGACacgaauugucggaguauguuuaugauuu
(((((.((((....(((((((.((((((((((.((((.(((.((.(.(((((((((....)))).))))).))).))).)))).))))))))))..)).)))))...))))))))).

Structure

-     g    uuga     -  -u          U    C   C  C U     -    a 
 gaucg ugag    auucc au  uuugugucUA UUUC GAG UG G UGACU gaaa g
 ||||| ||||    ||||| ||  |||||||||| |||| ||| || | ||||| ||||  
 uuagu auuu    ugagg ug  aagcaCAGAU AAAG CUC AC C ACUga cuuu a
u     -    -gua     c  uu          U    U   U  - U     g    a 

Annotation confidence Medium

Genome context

Crem_Contig74: 221632-221748 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-2228

Mature crm-miR-2228-5p

• Accession: MIMAT0056880
• Description: Caenorhabditis remanei crm-miR-2228-5p mature miRNA
• Sequence: 31 - UAUUUUCCGAGCUGCGUUGACU - 52
• Evidence: experimental ; 454 [1]

Mature crm-miR-2228-3p

• Accession: MIMAT0011625
• Description: Caenorhabditis remanei crm-miR-2228-3p mature miRNA
• Sequence: 68 - UCAUCCAUCUCUGAAAUUAGAC - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074