Stem-loop crm-mir-64e

Accession

MI0011121

Description

Caenorhabditis remanei crm-mir-64e precursor miRNA

Literature search

1 open access papers mention crm-mir-64e
(17 sentences)

Sequence

785991 reads, 6776.0 reads per million, 9 experiments

acggacccaaaggaccccacccggcUAUGACACUGUAACAUGUCCUGGuaauagcagagauucugaauccAGACAUGUAAAGUUUCAUUGCugguggucuccugaauuguauugu
..........((((..(((((.(((.((((.(((...(((((((.(((......((((...))))...))))))))))..))).)))).))))))))..))))............

Structure

--acggacccaa    cc     c   U    C   GUA       C   uaauag    g 
            agga  ccacc ggc AUGA ACU   ACAUGUC UGG      caga  
            ||||  ||||| ||| |||| |||   ||||||| |||      |||| a
            uccu  ggugg uCG UACU UGA   UGUACAG Acc      gucu  
uguuauguuaag    cu     -   U    U   -AA       -   ---uaa    u 

Annotation confidence High

Genome context

Crem_Contig41: 72615-72729 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-64e

Mature crm-miR-64e-5p

• Accession: MIMAT0011628
• Description: Caenorhabditis remanei crm-miR-64e-5p mature miRNA
• Sequence: 26 - UAUGACACUGUAACAUGUCCUGG - 48
• Evidence: experimental ; 454 [1]

Mature crm-miR-64e-3p

• Accession: MIMAT0056881
• Description: Caenorhabditis remanei crm-miR-64e-3p mature miRNA
• Sequence: 71 - AGACAUGUAAAGUUUCAUUGC - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074