Stem-loop crm-mir-2231

Accession

MI0011123

Description

Caenorhabditis remanei crm-mir-2231 precursor miRNA

Sequence

uugcugauuuauguuuuggagacugAACGGCAAAAACUACAGGUAGCagacauauuacuagcUCCCUGAGUUCAUGCCGUUCaguuuuuugaaagcauuaguucgaaagguaag
(((((((((.((((((((((((((((((((((..((((.((((.(((((........)).))).))))))))..)))))))))))))))..))))))).)))).....))))).

Structure

-     -----    u       --               AA    A    U   -  aca 
 uugcu     gauu auguuuu  ggagacugAACGGCA  AACU CAGG AGC ag   u
 |||||     |||| |||||||  |||||||||||||||  |||| |||| ||| ||    
 aaugg     uuga uacgaaa  uuuuugaCUUGCCGU  UUGA GUCC Ucg uc   a
g     aaagc    u       gu               AC    -    C   a  auu 

Annotation confidence Not enough data

Genome context

Crem_Contig233: 19016-19129 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from crm-mir-2231

Mature crm-miR-2231-5p

• Accession: MIMAT0011631
• Description: Caenorhabditis remanei crm-miR-2231-5p mature miRNA
• Sequence: 26 - AACGGCAAAAACUACAGGUAGC - 47
• Evidence: experimental ; 454 [1]

Mature crm-miR-2231-3p

• Accession: MIMAT0011632
• Description: Caenorhabditis remanei crm-miR-2231-3p mature miRNA
• Sequence: 63 - UCCCUGAGUUCAUGCCGUUC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074