Stem-loop crm-mir-66

Accession

MI0011125

Description

Caenorhabditis remanei crm-mir-66 precursor miRNA

Sequence

ucccaccggaaaagaacacaaagccaugCAUGACACAGAUUAAAGGAUGUGacacuuaacaacaaguagaucACACCUUUAGCCGUGUCAGACauggcuuguucggaguacgguagagga
((((((((.....(((((...(((((((..((((((.(.(((((((.((((((((((......)))).).))))))))))))).))))))..))))))))))))......)))).).)))

Structure

   - -    -gaaaa     caa       CA      A A       A     - -    aa 
ucc c accg      gaaca   agccaug  UGACAC G UUAAAGG UGUGa c acuu  c
||| | ||||      |||||   |||||||  |||||| | ||||||| ||||| | ||||   
agg g uggc      cuugu   ucgguaC  ACUGUG C GAUUUCC ACAcu g ugaa  a
   a a    augagg     ---       AG      C -       -     a a    ca 

Annotation confidence Not enough data

Genome context

Crem_Contig41: 72081-72200 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-66

Mature crm-miR-66-5p

• Accession: MIMAT0011635
• Description: Caenorhabditis remanei crm-miR-66-5p mature miRNA
• Sequence: 29 - CAUGACACAGAUUAAAGGAUGUG - 51
• Evidence: experimental ; 454 [1]

Mature crm-miR-66-3p

• Accession: MIMAT0011636
• Description: Caenorhabditis remanei crm-miR-66-3p mature miRNA
• Sequence: 73 - ACACCUUUAGCCGUGUCAGAC - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074