Stem-loop ppc-mir-42a

Accession

MI0011129

Description

Pristionchus pacificus ppc-mir-42a precursor miRNA

Sequence

7837 reads, 1314.0 reads per million, 12 experiments

gugcauucagugcagcccgcAGUGGGUGUCUGCCUCGGUCUGaagugugagaugcaugauccuccguucuUCACCGGGUGAACAUCCAUUGCgggcgcaugcacc
(((((.....(((.(((((((((((((((.((((.((((..((((...(((((.....)).)))....)))))))))))).))))))))))))))))))))))).

Structure

-     uucag   a               C    U    CU    -ugu   -  g 
 gugca     ugc gcccgcAGUGGGUGU UGCC CGGU  Gaag    gag au c
 |||||     ||| ||||||||||||||| |||| ||||  ||||    ||| || a
 cacgu     acg cgggCGUUACCUACA GUGG GCCA  CUuc    cuc ua u
c     -----   -               A    -    --    uugc   c  g 

Annotation confidence High

Genome context

ABKE03000123.1: 6561540-6561644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-42a

Mature ppc-miR-42a-5p

• Accession: MIMAT0056913
• Description: Pristionchus pacificus ppc-miR-42a-5p mature miRNA
• Sequence: 21 - AGUGGGUGUCUGCCUCGGUCUG - 42
• Evidence: experimental ; 454 [1]

Mature ppc-miR-42a-3p

• Accession: MIMAT0011641
• Description: Pristionchus pacificus ppc-miR-42a-3p mature miRNA
• Sequence: 71 - UCACCGGGUGAACAUCCAUUGC - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074