Stem-loop ppc-mir-87

Accession

MI0011132

Description

Pristionchus pacificus ppc-mir-87 precursor miRNA

Literature search

2 open access papers mention ppc-mir-87
(2 sentences)

Sequence

11112 reads, 1840.0 reads per million, 12 experiments

ggggugacgucaugcucguCGCCUGAACUUGUACUCAACCUcgucaauagaugagcgcagGUGAGCAAAGUUUCAGGUGUGCgagcuagcgucccccu
((((.(((((...(((((((((((((((((...((((.((((((((.....))).)).)))))))..))).)))))))).))))))..))))))))).

Structure

-    u     cau      -        -   GUA    A   -  -   a 
 gggg gacgu   gcucgu CGCCUGAA CUU   CUCA CCU cg uca u
 |||| |||||   |||||| |||||||| |||   |||| ||| || ||| a
 cccc cugcg   cgagCG GUGGACUU GAA   GAGU Gga gc agu g
u    -     -au      U        U   -AC    -   c  g   a 

Annotation confidence High

Genome context

ABKE03000021.1: 530085-530182 [+]

Mature ppc-miR-87-5p

• Accession: MIMAT0056916
• Description: Pristionchus pacificus ppc-miR-87-5p mature miRNA
• Sequence: 20 - CGCCUGAACUUGUACUCAACCU - 41
• Evidence: experimental ; 454 [1]

Mature ppc-miR-87-3p

• Accession: MIMAT0011644
• Description: Pristionchus pacificus ppc-miR-87-3p mature miRNA
• Sequence: 61 - GUGAGCAAAGUUUCAGGUGUGC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074