Stem-loop ppc-lin-4

Accession

MI0011136

Description

Pristionchus pacificus ppc-lin-4 precursor miRNA

Literature search

11 open access papers mention ppc-lin-4
(31 sentences)

Sequence

25266 reads, 3223.0 reads per million, 12 experiments

ccacaccacgacugcuagcaaauggcguUCCCUGAGACCUCAAUUGUGaugagauacgagucagucACGGUUUGAGCUCUCAUGGCACgcuaugcuugucgauguugug
.((((.((((((....((((..((((((.((.(((((.((((((((((((..(((....))).))))))).))))).))))).)).)))))))))).)))).)).))))

Structure

c    c  -    ugcu    aa      U  C     C     -       ga   a 
 caca ca cgac    agca  uggcgu CC UGAGA CUCAA UUGUGau  gau c
 |||| || ||||    ||||  |||||| || ||||| ||||| |||||||  |||  
 gugu gu gcug    ucgu  aucgCA GG ACUCU GAGUU GGCAcug  cug g
-    u  a    ---u    --      C  U     C     U       -a   a 

Annotation confidence High

Genome context

ABKE03000127.1: 381597-381705 [-]

Mature ppc-lin-4-5p

• Accession: MIMAT0011648
• Description: Pristionchus pacificus ppc-lin-4-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCUCAAUUGUG - 48
• Evidence: experimental ; 454 [1]

Mature ppc-lin-4-3p

• Accession: MIMAT0056920
• Description: Pristionchus pacificus ppc-lin-4-3p mature miRNA
• Sequence: 67 - ACGGUUUGAGCUCUCAUGGCAC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074