Stem-loop ppc-mir-84b

Accession

MI0011144

Description

Pristionchus pacificus ppc-mir-84b precursor miRNA

Literature search

1 open access papers mention ppc-mir-84b
(1 sentences)

Sequence

ucccuuccaaucgauaccacaguUGAGGUAGUUAAGAAUAUGUGaugccuuucgggaaucauucacuuauucuuccugccucaccugugacgauggaaucgga
(((.(((((.(((....(((((.((((((((..(((((((.(((((((((...)))...)).)))).))))))).)))))))).))))).))))))))..)))

Structure

   -c     a   auac     u        UU       U    -  ---   u 
ucc  uucca ucg    cacag UGAGGUAG  AAGAAUA GUGa ug   ccu  
|||  ||||| |||    ||||| ||||||||  ||||||| |||| ||   ||| u
agg  aaggu agc    guguc acuccguc  uucuuau cacu ac   ggg  
   cu     -   ---a     c        -c       u    u  uaa   c 

Annotation confidence Low

Genome context

ABKE03000008.1: 1931523-1931625 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-84b

Mature ppc-miR-84b

• Accession: MIMAT0011653
• Description: Pristionchus pacificus ppc-miR-84b mature miRNA
• Sequence: 24 - UGAGGUAGUUAAGAAUAUGUG - 44
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074