Stem-loop ppc-mir-42b

Accession

MI0011145

Description

Pristionchus pacificus ppc-mir-42b precursor miRNA

Sequence

cucugagccgugccuuugucacagaaucccugcgugaccugugaauugaucuuggUCACCGGGUUAUUCUGCGACCUaggcuccucucgga
.((((((..(.((((..(((.((((((.((((.((((((..............))))))))))..)))))).)))..)))).)..))))))

Structure

c      cc u    uu   a      -c    c      ugugaa 
 ucugag  g gccu  guc cagaau  ccug gugacc      u
 ||||||  | ||||  ||| ||||||  |||| ||||||       
 aggcuc  c cgga  CAG GUCUUA  GGGC CACUgg      u
-      uc u    UC   C      UU    -      uucuag 

Annotation confidence Not enough data

Genome context

ABKE03000031.1: 559584-559674 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-42b

Mature ppc-miR-42b

• Accession: MIMAT0011654
• Description: Pristionchus pacificus ppc-miR-42b mature miRNA
• Sequence: 56 - UCACCGGGUUAUUCUGCGACCU - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074