Stem-loop ppc-mir-46

Accession

MI0011147

Description

Pristionchus pacificus ppc-mir-46 precursor miRNA

Sequence

24228 reads, 2713.0 reads per million, 12 experiments

acccccggcaccacgcagagaccgAAGAGAGCCUUCUGUUGACAGUgcgggccguuggugcuaaugcuauUGUCAUGGAGUCGCUCUCUUCaggcuugugguccucagggu
((((..((.(((((...(((.(((((((((((.((((((.(((((((((((((....).)))..))).))))))))))))..))))))))).))))))))))))...))))

Structure

    -cc  c     gca   a  -         -C      U      -   --   - g 
accc   gg accac   gag cc gAAGAGAGC  UUCUGU GACAGU gcg  ggc c u
||||   || |||||   ||| || |||||||||  |||||| |||||| |||  ||| |  
uggg   cc uggug   uuc gg CUUCUCUCG  GAGGUA CUGUua cgu  ucg g u
    acu  -     ---   -  a         CU      -      u   aa   u g 

Annotation confidence High

Genome context

ABKE03000092.1: 4795409-4795519 [-]

Mature ppc-miR-46-5p

• Accession: MIMAT0056924
• Description: Pristionchus pacificus ppc-miR-46-5p mature miRNA
• Sequence: 25 - AAGAGAGCCUUCUGUUGACAGU - 46
• Evidence: experimental ; 454 [1]

Mature ppc-miR-46-3p

• Accession: MIMAT0011655
• Description: Pristionchus pacificus ppc-miR-46-3p mature miRNA
• Sequence: 71 - UGUCAUGGAGUCGCUCUCUUC - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074