Stem-loop ppc-mir-84a

Accession

MI0011159

Description

Pristionchus pacificus ppc-mir-84a precursor miRNA

Literature search

1 open access papers mention ppc-mir-84a
(1 sentences)

Sequence

uacuccucuccuucccgucgaucccucaguUGAGGUAGUUAAGAAUAAGUGaugaccaucagaaguauucacguauucucccugccuccacugugucggugggaggucuacaguac
((((.....(((.(((((((((....((((.(((((((...((((((.((((..((........))..)))).))))))..))))))).)))).)))))))))))).....)))).

Structure

-    ccucu   u         cccu    U       UUA      A    ug  cau 
 uacu     ccu cccgucgau    cagu GAGGUAG   AGAAUA GUGa  ac   c
 ||||     ||| |||||||||    |||| |||||||   |||||| ||||  ||    
 auga     gga ggguggcug    guca cuccguc   ucuuau cacu  ug   a
c    caucu   -         ---u    c       -cc      g    ua  aag 

Annotation confidence Not enough data

Genome context

ABKE03000008.1: 1931245-1931360 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-84a

Mature ppc-miR-84a

• Accession: MIMAT0011666
• Description: Pristionchus pacificus ppc-miR-84a mature miRNA
• Sequence: 31 - UGAGGUAGUUAAGAAUAAGUG - 51
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074