miRBase entry: ppc-mir-2252

Stem-loop ppc-mir-2252


Accession
MI0011160
Description
Pristionchus pacificus ppc-mir-2252 precursor miRNA


Sequence

gagggguggcacucggucuagaauuugacagauuaccgcaaaucugUCCUUCUAGCCCGAAGUGUCAGaaaauaauccua
..((((((((((((((.((((((...((((((((......)))))))).)))))).))).)))))))........)))).

Structure
ga    --------       -   u      uuu        ac 
  gggg        uggcacu cgg cuagaa   gacagauu  c
  ||||        ||||||| ||| ||||||   ||||||||   
  uccu        ACUGUGA GCC GAUCUU   CUgucuaa  g
-a    aauaaaaG       A   C      --C        ac 


Annotation confidence Not enough data
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Genome context
ABKE03000089.1: 1839992-1840071 [-]

Database links

Mature ppc-miR-2252

Accession MIMAT0011667
Description Pristionchus pacificus ppc-miR-2252 mature miRNA
Sequence 47 - UCCUUCUAGCCCGAAGUGUCAG - 68
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074