Stem-loop ppc-mir-2234a

Accession

MI0011163

Description

Pristionchus pacificus ppc-mir-2234a precursor miRNA

Sequence

2657 reads, 519.0 reads per million, 12 experiments

gagaggggucuguuggaaggcccgagucucacAGGGAGACAUGACAUUUAUCACUcgacuauucuaucgacagUGAUAUGUCAUCAUCUUCCUUUgagcgacggccuucccucucucucu
((((((((......((((((((...(.((((.(((((((.((((((..((((((((((........))))..))))))))))))..))))))).)))))...)))))))).)))))))).

Structure

-        ucuguu        cga u    c       -C      UU      --    cua 
 gagagggg      ggaaggcc   g cuca AGGGAGA  AUGACA  UAUCAC  Ucga   u
 ||||||||      ||||||||   | |||| |||||||  ||||||  ||||||  ||||    
 cucucucu      ccuuccgg   c gagU UCCUUCU  UACUGU  AUAGUg  agcu   u
u        -----c        cag -    U       AC      --      ac    auc 

Annotation confidence High

Genome context

ABKE03000131.1: 532559-532678 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2234a

Mature ppc-miR-2234a-5p

• Accession: MIMAT0056933
• Description: Pristionchus pacificus ppc-miR-2234a-5p mature miRNA
• Sequence: 33 - AGGGAGACAUGACAUUUAUCACU - 55
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2234a-3p

• Accession: MIMAT0011670
• Description: Pristionchus pacificus ppc-miR-2234a-3p mature miRNA
• Sequence: 74 - UGAUAUGUCAUCAUCUUCCUUU - 95
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074