Stem-loop ppc-mir-2244

Accession

MI0011166

Description

Pristionchus pacificus ppc-mir-2244 precursor miRNA

Sequence

1181 reads, 69.0 reads per million, 12 experiments

cgcgaagguggccGCUUACUUGGUAUUGUUGGUAgcgaugccuuaUCACAAUUCCAAGUAAGCCUGCaauuacacaaguga
(((....(((((.((((((((((.(((((.(((((.......)))))))))).))))))))))..))...)))....))).

Structure

-   gaag   ---  -c          U     U     cg 
 cgc    gug   gc  GCUUACUUGG AUUGU GGUAg  a
 |||    |||   ||  |||||||||| ||||| |||||  u
 gug    cau   CG  CGAAUGAACC UAACA CUauu  g
a   aaca   uaa  UC          U     -     cc 

Annotation confidence High

Genome context

ABKE03000060.1: 7338922-7339002 [-]

Mature ppc-miR-2244-5p

• Accession: MIMAT0056936
• Description: Pristionchus pacificus ppc-miR-2244-5p mature miRNA
• Sequence: 14 - GCUUACUUGGUAUUGUUGGUA - 34
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2244-3p

• Accession: MIMAT0011673
• Description: Pristionchus pacificus ppc-miR-2244-3p mature miRNA
• Sequence: 46 - UCACAAUUCCAAGUAAGCCUGC - 67
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074