Stem-loop ppc-mir-2248

Accession

MI0011167

Description

Pristionchus pacificus ppc-mir-2248 precursor miRNA

Sequence

574 reads, 46.0 reads per million, 12 experiments

gagcgcucaccaguccggCUCCAGAACACGUCAAGAGAGacacuucaccucucgggaagcagcccucucucucUCUCUUGACUGGUCUGGAACCagacuccgcgcuc
((((((.....((((.((.((((((.((.(((((((((((..((((.((....))))))............))))))))))))).)))))).)).))))..))))))

Structure

      ucacc    c  C      A  C           ----------ca    a  u 
gagcgc     aguc gg UCCAGA CA GUCAAGAGAGa            cuuc cc c
||||||     |||| || |||||| || |||||||||||            |||| ||  
cucgcg     ucag CC AGGUCU GU CAGUUCUCUcu            gaag gg u
      ---cc    a  A      G  -           cucucucccgac    -  c 

Annotation confidence High

Genome context

ABKE03000060.1: 8726562-8726668 [-]

Mature ppc-miR-2248-5p

• Accession: MIMAT0011674
• Description: Pristionchus pacificus ppc-miR-2248-5p mature miRNA
• Sequence: 19 - CUCCAGAACACGUCAAGAGAG - 39
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2248-3p

• Accession: MIMAT0056937
• Description: Pristionchus pacificus ppc-miR-2248-3p mature miRNA
• Sequence: 74 - UCUCUUGACUGGUCUGGAACC - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074