Stem-loop ppc-mir-2235a-5

Accession

MI0011178

Description

Pristionchus pacificus ppc-mir-2235a-5 precursor miRNA mir-2235

Gene
family

RF04169; mir-2235

Sequence

gggccgcucuugcccgcUCAUUCAAUAUUGCCGGUUUGAACgaaauugaucaguUCACCGGGAGCAUUGUAUGAUCgggcuucagacccu
(((...((...(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))...)).))).

Structure

-   ccg  cuu     c    U    A  G     UU    -  aa 
 ggg   cu   gcccg UCAU CAAU UU CCGGU  GAAC ga  u
 |||   ||   ||||| |||| |||| || |||||  |||| ||   
 ccc   ga   cgggC AGUA GUUA GA GGCCA  CUug cu  u
u   --a  cuu     U    U    C  G     --    a  ag 

Annotation confidence Low

Genome context

ABKE03000123.1: 4486054-4486143 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-2235a-5

Mature ppc-miR-2235a-3p

• Accession: MIMAT0011681
• Description: Pristionchus pacificus ppc-miR-2235a-3p mature miRNA
• Sequence: 55 - UCACCGGGAGCAUUGUAUGAUC - 76
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2235a-5p

• Accession: MIMAT0032107
• Description: Pristionchus pacificus ppc-miR-2235a-5p mature miRNA
• Sequence: 18 - UCAUUCAAUAUUGCCGGUUUGAAC - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074


2. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260