Accession
MI0011179
Description
Pristionchus pacificus
ppc-mir-2235a-6 precursor miRNA mir-2235
Gene
family?
family?
RF04169;
mir-2235
Sequence
gggccgcucuugcccgcUCAUUCAAUAUUGCCGGUUUGAACgaaauugaucaguUCACCGGGAGCAUUGUAUGAUCgggauucggacccu
((((((......((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).))))...))).))).
((((((......((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).))))...))).))).
Structure
- - cucuug c U A G UU - aa ggg ccg cccg UCAU CAAU UU CCGGU GAAC ga u ||| ||| |||| |||| |||| || ||||| |||| || ccc ggc gggC AGUA GUUA GA GGCCA CUug cu u u a ---uua U U C G -- a ag
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
ABKE03000123.1: 4491870-4491959 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-2235a-6
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2235a-3p
| Accession | MIMAT0011681 |
| Description | Pristionchus pacificus ppc-miR-2235a-3p mature miRNA |
| Sequence | 55 - UCACCGGGAGCAUUGUAUGAUC - 76 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2235a-5p
| Accession | MIMAT0032107 |
| Description | Pristionchus pacificus ppc-miR-2235a-5p mature miRNA |
| Sequence | 18 - UCAUUCAAUAUUGCCGGUUUGAAC - 41 |
| Evidence |
experimental
SOLiD [1] |
References
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