Stem-loop ppc-mir-2236b

Accession

MI0011184

Description

Pristionchus pacificus ppc-mir-2236b precursor miRNA

Sequence

agaucgaaauucauucggUCCCUGAGGUUGAUUACUCACUuucucuuugauguucagugaguuaauccaccugaggcaccgaaagaucgauc
.((((((...((.((((((.(((.((((.(((((((((((....(......)...)))))).))))).)))).))).)))))).))))))))

Structure

a      aau  a      C   G    U     -      uucu uu 
 gaucga   uc uucggU CCU AGGU GAUUA CUCACU    c  u
 ||||||   || |||||| ||| |||| ||||| ||||||    |   
 cuagcu   ag aagcca gga ucca cuaau gaguga    g  g
-      ---  a      c   g    c     u      -cuu ua 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 3220933-3221024 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2236b

Mature ppc-miR-2236b

• Accession: MIMAT0011684
• Description: Pristionchus pacificus ppc-miR-2236b mature miRNA
• Sequence: 19 - UCCCUGAGGUUGAUUACUCACU - 40
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074