Stem-loop ppc-mir-2259

Accession

MI0011185

Description

Pristionchus pacificus ppc-mir-2259 precursor miRNA

Sequence

ggauaauaguugggugcugauccuccgguccaauUGGCAAGAUUAACUAGCUUACUGcugugcauugaauugacagugaguuaguuuuucuagccuacuggcauggaucaaccucauucc
..........((((.(.((((((....(.(((...(((.(((..((((((((((((((.((.......)).).)))))))))))))..))).)))...))))..)))))).)))))....

Structure

ggauaauagu    u c      uccg u   auU   A   UU             - u  gc 
          uggg g ugaucc    g cca   GGC AGA  AACUAGCUUACUG c gu  a
          |||| | ||||||    | |||   ||| |||  ||||||||||||| | ||  u
          acuc c acuagg    c ggu   ccg ucu  uugauugagugac g ua  u
------ccuu    - a      --ua -   cau   a   uu             a u  ag 

Annotation confidence Not enough data

Genome context

ABKE03000007.1: 743374-743493 [-]

Mature ppc-miR-2259

• Accession: MIMAT0011685
• Description: Pristionchus pacificus ppc-miR-2259 mature miRNA
• Sequence: 35 - UGGCAAGAUUAACUAGCUUACUG - 57
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074