Stem-loop ppc-mir-2260

Accession

MI0011186

Description

Pristionchus pacificus ppc-mir-2260 precursor miRNA

Sequence

5602 reads, 266.0 reads per million, 10 experiments

cucgacccgcuuccuauuucaaucnnnnnnnnnnccuuaUCCUUGGAACUGCUGAUCUUAUCgcaaaauaaugugcgugaUAAGGUGGCUUUUCUGAAGAUCaggacuucgag
..................................(((.(((.((((((..(((.((((((((((............)))))))))))))..)))))).))).)))........

Structure

cucgacccgcuuccuauuucaaucnnnnnnnnnn   u   C      CU   G          aaaau 
                                  ccu aUC UUGGAA  GCU AUCUUAUCgc     a
                                  ||| ||| ||||||  ||| ||||||||||      
                                  gga UAG AGUCUU  CGG UGGAAUagug     a
--------------------------gagcuuca   C   A      UU   -          cgugu 

Annotation confidence High

Genome context

Unknown

Mature ppc-miR-2260-5p

• Accession: MIMAT0056941
• Description: Pristionchus pacificus ppc-miR-2260-5p mature miRNA
• Sequence: 40 - UCCUUGGAACUGCUGAUCUUAUC - 62
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2260-3p

• Accession: MIMAT0011686
• Description: Pristionchus pacificus ppc-miR-2260-3p mature miRNA
• Sequence: 81 - UAAGGUGGCUUUUCUGAAGAUC - 102
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074