Stem-loop ppc-mir-2261

Accession

MI0011187

Description

Pristionchus pacificus ppc-mir-2261 precursor miRNA

Sequence

cguugcuguuauucguucaccguuggcuaaacucagagcacucgugcagUUUGGCAACUCAUGAACGAAUGacggcuccgg
((..(((((((((((((((..((((.(((((((((((....)).)).)))))))))))...)))))))))))))))..)).

Structure

-  uu               -cc    g       -  -  g 
 cg  gcuguuauucguuca   guug cuaaacu ca ga c
 ||  |||||||||||||||   |||| ||||||| || ||  
 gc  cggcaGUAAGCAAGU   CAAC GGUUUga gu cu a
g  cu               ACU    -       c  g  c 

Annotation confidence Not enough data

Genome context

ABKE03000015.1: 215648-215728 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2261

Mature ppc-miR-2261

• Accession: MIMAT0011687
• Description: Pristionchus pacificus ppc-miR-2261 mature miRNA
• Sequence: 50 - UUUGGCAACUCAUGAACGAAUG - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074