Stem-loop ppc-mir-2240b

Accession

MI0011189

Description

Pristionchus pacificus ppc-mir-2240b precursor miRNA

Sequence

uacucgcaacgucccuuaucuucugaaaucucuguuucgaucacuaauuggagugaUCCCAGGGAUUCUCAGUAGAUUagggcaucgagu
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))

Structure

u     caac u    u    u    -        uuuc       aa 
 acucg    g cccu aucu cuga aaucucug    gaucacu  u
 |||||    | |||| |||| |||| ||||||||    |||||||   
 ugagc    c ggga UAGA GACU UUAGGGAC    CUaguga  u
-     --ua -    U    U    C        ---C       gg 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 536132-536221 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2240b

Mature ppc-miR-2240b

• Accession: MIMAT0011689
• Description: Pristionchus pacificus ppc-miR-2240b mature miRNA
• Sequence: 57 - UCCCAGGGAUUCUCAGUAGAUU - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074