Accession
MI0011189
Description
Pristionchus pacificus
ppc-mir-2240b precursor miRNA
Sequence
4675
reads,
225.0
reads per million, 12 experiments
uacucgcaacgucccuuAUCUUCUGAAAUCUCUGUUUCGAUCacuaauuggagugaUCCCAGGGAUUCUCAGUAGAUUagggcaucgagu
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))
Structure
u caac u u U - UUUC aa acucg g cccu AUCU CUGA AAUCUCUG GAUCacu u ||||| | |||| |||| |||| |||||||| ||||||| ugagc c ggga UAGA GACU UUAGGGAC CUaguga u - --ua - U U C ---C gg
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000048.1: 536132-536221 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-2240b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2240b-5p
| Accession | MIMAT0056944 |
| Description | Pristionchus pacificus ppc-miR-2240b-5p mature miRNA |
| Sequence | 18 - AUCUUCUGAAAUCUCUGUUUCGAUC - 42 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2240b-3p
| Accession | MIMAT0011689 |
| Description | Pristionchus pacificus ppc-miR-2240b-3p mature miRNA |
| Sequence | 57 - UCCCAGGGAUUCUCAGUAGAUU - 78 |
| Evidence |
experimental
454 [1] |
References
|
