Stem-loop ppc-mir-2240a-1

Accession

MI0011190

Description

Pristionchus pacificus ppc-mir-2240a-1 precursor miRNA

Sequence

gcuacucgcaacgucccuuaucuucugaaauccagguuucgaucacuaauuggugugaUCACCGGGAUUCUCAGUGGAUUagggcaucgagucagcu
((((((((....(.((((.((((.(((((((((.(((...((((((........))))))))).))))).)))).)))).)))))..))))).))).

Structure

-   -     caac u    u    u    -     a   uuc      uaa 
 gcu acucg    g cccu aucu cuga aaucc ggu   gaucac   u
 ||| |||||    | |||| |||| |||| ||||| |||   ||||||    
 cga ugagc    c ggga UAGG GACU UUAGG CCA   CUagug   u
u   c     --ua -    U    U    C     G   ---      ugg 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 536003-536099 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2240a-1

Mature ppc-miR-2240a

• Accession: MIMAT0011690
• Description: Pristionchus pacificus ppc-miR-2240a mature miRNA
• Sequence: 59 - UCACCGGGAUUCUCAGUGGAUU - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074