Accession
MI0011191
Description
Pristionchus pacificus
ppc-mir-2240a-2 precursor miRNA
Sequence
1587
reads,
77.0
reads per million, 12 experiments
gcuacucgcaacgucccuuAUCUUCUGAAAUCCAGGUUUCGAUCacuaauuggugugaUCACCGGGAUUCUCAGUGGAUUagggcaucgagucggcu
((((((((....(.((((.((((.(((((((((.(((...((((((........))))))))).))))).)))).)))).)))))..))))).))).
((((((((....(.((((.((((.(((((((((.(((...((((((........))))))))).))))).)))).)))).)))))..))))).))).
Structure
- - caac u u U - A UUC uaa gcu acucg g cccu AUCU CUGA AAUCC GGU GAUCac u ||| ||||| | |||| |||| |||| ||||| ||| |||||| cgg ugagc c ggga UAGG GACU UUAGG CCA CUagug u u c --ua - U U C G --- ugg
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000048.1: 535876-535972 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-2240a-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2240a-5p
| Accession | MIMAT0056945 |
| Description | Pristionchus pacificus ppc-miR-2240a-5p mature miRNA |
| Sequence | 20 - AUCUUCUGAAAUCCAGGUUUCGAUC - 44 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2240a-3p
| Accession | MIMAT0011690 |
| Description | Pristionchus pacificus ppc-miR-2240a-3p mature miRNA |
| Sequence | 59 - UCACCGGGAUUCUCAGUGGAUU - 80 |
| Evidence |
experimental
454 [1] |
References
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