Stem-loop ppc-mir-2238c

Accession

MI0011196

Description

Pristionchus pacificus ppc-mir-2238c precursor miRNA

Sequence

640 reads, 39.0 reads per million, 12 experiments

uuaugauaccuagucgauccucuuucCCGUUCACUCUUCUCGUCAGUCGaugaugaauuucgAAUGACAGAACAAGUGCGCGAGaaggaagacuagcuuccgugau
(((((..(.((((((..((((...((.(((.((((.((((.((((.((((.........)))).))))))))..)))).))).)))))).)))))).)..))))).

Structure

-     au c      ga    cuu  C   U    -C    C    G    uga 
 uuaug  a cuaguc  uccu   uc CGU CACU  UUCU GUCA UCGa   u
 |||||  | ||||||  ||||   || ||| ||||  |||| |||| ||||   g
 agugc  u gaucag  agga   aG GCG GUGA  AAGA CAGU Agcu   a
u     cu c      -a    ---  A   C    AC    -    A    uua 

Annotation confidence High

Genome context

ABKE03000093.1: 8986518-8986623 [+]

Mature ppc-miR-2238c-5p

• Accession: MIMAT0056950
• Description: Pristionchus pacificus ppc-miR-2238c-5p mature miRNA
• Sequence: 27 - CCGUUCACUCUUCUCGUCAGUCG - 49
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2238c-3p

• Accession: MIMAT0011693
• Description: Pristionchus pacificus ppc-miR-2238c-3p mature miRNA
• Sequence: 63 - AAUGACAGAACAAGUGCGCGAG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074