Stem-loop ppc-mir-54

Accession

MI0011198

Description

Pristionchus pacificus ppc-mir-54 precursor miRNA

Literature search

2 open access papers mention ppc-mir-54
(2 sentences)

Sequence

14437 reads, 2046.0 reads per million, 12 experiments

agguuagcuguauuccuucucuacugccgucCGAGUUAUUUCAUUCGGGUCUaccuauugagaggcuaAACCCGUAAUGAUAAUAAUUCGCGcggcuugaggacggaucagcgagucuug
(((...((((.((((.(((((....(((((.(((((((((((((((((((.(((((......))).)).))))).))))).))))))))).)))))..))))).))))))))....))).

Structure

-   -uua    u    c     uacu     c         -     -     C  -   au 
 agg    gcug auuc uucuc    gccgu CGAGUUAUU UCAUU CGGGU Ua ccu  u
 |||    |||| |||| |||||    ||||| ||||||||| ||||| ||||| || |||   
 uuc    cgac uagg aggag    cggcG GCUUAAUAA AGUAA GCCCA au gga  g
g   ugag    -    c     --uu     C         U     U     A  c   ga 

Annotation confidence High

Genome context

ABKE03000107.1: 3735128-3735247 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-54

Mature ppc-miR-54-5p

• Accession: MIMAT0056951
• Description: Pristionchus pacificus ppc-miR-54-5p mature miRNA
• Sequence: 32 - CGAGUUAUUUCAUUCGGGUCU - 52
• Evidence: experimental ; 454 [1]

Mature ppc-miR-54-3p

• Accession: MIMAT0011695
• Description: Pristionchus pacificus ppc-miR-54-3p mature miRNA
• Sequence: 69 - AACCCGUAAUGAUAAUAAUUCGCG - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074