Stem-loop ppc-mir-55b

Accession

MI0011199

Description

Pristionchus pacificus ppc-mir-55b precursor miRNA

Sequence

gcacagcuaaguuucgacguauaacgugcaggucgcccuauaugaaauggucgcAACCCGUAACGUUAUAUUUCGGaacucuugugagugca
((((.((..((((((((.(((((((((((.(((.((.((((.....))))..)).))).)).))))))))).))))))))...))..)))).

Structure

-    -a  -ua        c         -  a   c  -c    a 
 gcac  gc   aguuucga guauaacgu gc ggu gc  cuau u
 ||||  ||   |||||||| ||||||||| || ||| ||  |||| g
 cgug  ug   ucaaGGCU UAUAUUGCA UG CCA cg  ggua a
a    ag  uuc        U         A  C   A  cu    a 

Annotation confidence Not enough data

Genome context

ABKE03000107.1: 3735291-3735382 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-55b

Mature ppc-miR-55b

• Accession: MIMAT0011696
• Description: Pristionchus pacificus ppc-miR-55b mature miRNA
• Sequence: 55 - AACCCGUAACGUUAUAUUUCGG - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074