Stem-loop ppc-mir-2263

Accession

MI0011200

Description

Pristionchus pacificus ppc-mir-2263 precursor miRNA

Sequence

gcuauucgccaugcccccauccucaaaaauuccgagaaccacgaauugaaugugGUCUCGGGCUUCUUUGAGGAUaagggcuucgggucagc
((((((((....((((..(((((((((((.(((((((.(((((.......)))))))))))).)).)))))))))..))))..))))).)))

Structure

   -     ccau    cc         -  u       a     aa 
gcu auucg    gccc  auccucaaa aa uccgaga ccacg  u
||| |||||    ||||  ||||||||| || ||||||| |||||  u
cga ugggc    cggg  UAGGAGUUU UU GGGCUCU Ggugu  g
   c     --uu    aa         C  C       -     aa 

Annotation confidence Not enough data

Genome context

ABKE03000107.1: 3739758-3739849 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2263

Mature ppc-miR-2263

• Accession: MIMAT0011697
• Description: Pristionchus pacificus ppc-miR-2263 mature miRNA
• Sequence: 55 - GUCUCGGGCUUCUUUGAGGAU - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074