Stem-loop ppc-mir-2264

Accession

MI0011201

Description

Pristionchus pacificus ppc-mir-2264 precursor miRNA

Sequence

gcacaguccacgccgcgggUAUCACAGCGCACAACGGCGAUgagugucacuguacgaaauauccccggaugcgcacugugaagcccgcggauggaccacugc
(((..(((((..((((((((.((((((.((.((.(((.((((..(((......)))...)))).)))..)).)).)))))).)))))))).)))))...)))

Structure

   -ca     cg        A      C  A  -A   C    -ag   ca 
gca   gucca  ccgcgggU UCACAG GC CA  CGG GAUg   ugu  c
|||   |||||  |||||||| |||||| || ||  ||| ||||   |||   
cgu   caggu  ggcgcccg aguguc cg gu  gcc cuau   gca  u
   cac     -a        a      a  c  ag   c    aaa   ug 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 545120-545221 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2264

Mature ppc-miR-2264

• Accession: MIMAT0011698
• Description: Pristionchus pacificus ppc-miR-2264 mature miRNA
• Sequence: 20 - UAUCACAGCGCACAACGGCGAU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074