Stem-loop ppc-mir-2265

Accession

MI0011203

Description

Pristionchus pacificus ppc-mir-2265 precursor miRNA

Sequence

cgaugcccgugcuagcAACCAGAUGGAAACGAGGAGGagucccuuugaacgaaucccgccccggccucaucuggucccuggcugggcauc
.((((((((.(((((..(((((((((...((.((.(((.((.........)).)))..)).))...)))))))))..)))))))))))))

Structure

c        u     cA         AAA  A  -A   g  ccu 
 gaugcccg gcuag  ACCAGAUGG   CG GG  GGa uc   u
 |||||||| |||||  |||||||||   || ||  ||| ||   u
 cuacgggu cgguc  uggucuacu   gc cc  ccu ag   g
-        -     cc         ccg  c  gc   a  caa 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 401564-401653 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2265

Mature ppc-miR-2265

• Accession: MIMAT0011700
• Description: Pristionchus pacificus ppc-miR-2265 mature miRNA
• Sequence: 17 - AACCAGAUGGAAACGAGGAGG - 37
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074