miRBase entry: ppc-mir-2266

Stem-loop ppc-mir-2266


Accession
MI0011204
Description
Pristionchus pacificus ppc-mir-2266 precursor miRNA


Sequence

auucguuccucagcgcccucggAACCCGAUUGUGUCUAGUGUUCugugauuacgaagcaugagcacuagguacucucaggucccgagcggaggaaccgaa
.((((((((((..(((..((((.(((.((..((((((((((((((((.........))).)))))))))))))..)).))).))))))))))))).))))

Structure
a    -      ag   cc    A   C  UU             -   gau 
 uucg uuccuc  cgc  ucgg ACC GA  GUGUCUAGUGUUC ugu   u
 |||| ||||||  |||  |||| ||| ||  ||||||||||||| |||   a
 aagc aaggag  gcg  agcc ugg cu  cauggaucacgag acg   c
-    c      --   --    c   a  cu             u   aag 


Annotation confidence Not enough data
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Genome context
ABKE03000024.1: 401456-401555 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from ppc-mir-2266
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2266

Accession MIMAT0011701
Description Pristionchus pacificus ppc-miR-2266 mature miRNA
Sequence 23 - AACCCGAUUGUGUCUAGUGUUC - 44
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074