Stem-loop ppc-mir-2237a

Accession

MI0011205

Description

Pristionchus pacificus ppc-mir-2237a precursor miRNA

Sequence

ggcaucugugccagaUACCCGUUGGUUUUCGGACAGUUcgugauugacagcgaaccguucggcgcuaucgggugccuggcuaggauggcca
(((((((..(((((.((((((.((((..((((((.((((((........)))))).)))))).)))).)))))).)))))..)))).))).

Structure

-   -    gu     a      U    UU      A      gau 
 ggc aucu  gccag UACCCG UGGU  UCGGAC GUUcgu   u
 ||| ||||  ||||| |||||| ||||  |||||| ||||||    
 ccg uagg  cgguc gugggc aucg  ggcuug caagcg   g
a   g    au     c      u    -c      c      aca 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 401313-401403 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2237a

Mature ppc-miR-2237a

• Accession: MIMAT0011702
• Description: Pristionchus pacificus ppc-miR-2237a mature miRNA
• Sequence: 16 - UACCCGUUGGUUUUCGGACAGUU - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074