Stem-loop ppc-mir-2237b

Accession

MI0011206

Description

Pristionchus pacificus ppc-mir-2237b precursor miRNA

Sequence

ugguaucggugccaaaUACCCGUAGUUUUCGGACAGUUcguaaauuuuaacgcacugccuagaauauacggguuccuggcuaagagaaccau
((((.((...((((...((((((((((((.((.((((.(((........))).)))))).))))).)))))))...))))...))..)))).

Structure

-    -a  ggu    aaU       -     C  A    U   aaa 
 uggu  uc   gcca   ACCCGUA GUUUU GG CAGU cgu   u
 ||||  ||   ||||   ||||||| ||||| || |||| |||    
 acca  ag   cggu   ugggcau uaaga cc guca gca   u
u    ag  aau    ccu       a     u  -    c   auu 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 400877-400968 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2237b

Mature ppc-miR-2237b

• Accession: MIMAT0011703
• Description: Pristionchus pacificus ppc-miR-2237b mature miRNA
• Sequence: 17 - UACCCGUAGUUUUCGGACAGUU - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074