Stem-loop ppc-mir-2245

Accession

MI0011212

Description

Pristionchus pacificus ppc-mir-2245 precursor miRNA

Sequence

781 reads, 62.0 reads per million, 12 experiments

guacuugauucuccccccucaucgucuAGCAUAGUUCCGCUCGUAUUUGCcauuccgaauagugcAAUAUGAGUGAAAGUAUGCCACacgauagggggauuacaguauc
(((((((((....((((((.(((((...(((((.((.((((((((((.((.(((......))))))))))))))).)).)))))...))))))))))))))).))))).

Structure

-     -    ucuc      c     cuA     G  C          U  c   cc 
 guacu ugau    cccccu aucgu   GCAUA UU CGCUCGUAUU GC auu  g
 ||||| ||||    |||||| |||||   ||||| || |||||||||| || |||   
 uauga auua    ggggga uagca   CGUAU AA GUGAGUAUAA cg uga  a
c     c    ----      -     CAC     G  A          -  -   ua 

Annotation confidence High

Genome context

ABKE03000021.1: 2197296-2197404 [-]

Mature ppc-miR-2245-5p

• Accession: MIMAT0056958
• Description: Pristionchus pacificus ppc-miR-2245-5p mature miRNA
• Sequence: 28 - AGCAUAGUUCCGCUCGUAUUUGC - 50
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2245-3p

• Accession: MIMAT0011709
• Description: Pristionchus pacificus ppc-miR-2245-3p mature miRNA
• Sequence: 66 - AAUAUGAGUGAAAGUAUGCCAC - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074