Stem-loop ppc-mir-2245

Accession

MI0011212

Description

Pristionchus pacificus ppc-mir-2245 precursor miRNA

Sequence

guacuugauucuccccccucaucgucuagcauaguuccgcucguauuugccauuccgaauagugcAAUAUGAGUGAAAGUAUGCCACacgauagggggauuacaguauc
(((((((((....((((((.(((((...(((((.((.((((((((((.((.(((......))))))))))))))).)).)))))...))))))))))))))).))))).

Structure

-     -    ucuc      c     cua     g  c          u  c   cc 
 guacu ugau    cccccu aucgu   gcaua uu cgcucguauu gc auu  g
 ||||| ||||    |||||| |||||   ||||| || |||||||||| || |||   
 uauga auua    ggggga uagca   CGUAU AA GUGAGUAUAA cg uga  a
c     c    ----      -     CAC     G  A          -  -   ua 

Annotation confidence Not enough data

Genome context

ABKE03000021.1: 2197296-2197404 [-]

Mature ppc-miR-2245

• Accession: MIMAT0011709
• Description: Pristionchus pacificus ppc-miR-2245 mature miRNA
• Sequence: 66 - AAUAUGAGUGAAAGUAUGCCAC - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074