Stem-loop ppc-mir-2246

Accession

MI0011214

Description

Pristionchus pacificus ppc-mir-2246 precursor miRNA

Sequence

cccuucgcccucagagucccgcUAUCACAAUAGUUUAGUUGCCGCauauaauggaagaugccgcucuaaacuguuguaauaccgggcggaggaguuggga
(((..(..((((...(.((((.(((.((((((((((((..((.((((..........)))).)).)))))))))))).))).))))).)))).)..))).

Structure

-   uu gc    aga u    c   C            UU  C    auaa 
 ccc  c  ccuc   g cccg UAU ACAAUAGUUUAG  GC GCau    u
 |||  |  ||||   | |||| ||| ||||||||||||  || ||||     
 ggg  g  ggag   c gggc aua uguugucaaauc  cg cgua    g
a   uu -a    --g -    c   a            -u  c    gaag 

Annotation confidence Not enough data

Genome context

ABKE03000119.1: 316972-317071 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2246

Mature ppc-miR-2246

• Accession: MIMAT0011711
• Description: Pristionchus pacificus ppc-miR-2246 mature miRNA
• Sequence: 23 - UAUCACAAUAGUUUAGUUGCCGC - 45
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074