Stem-loop ppc-mir-2249

Accession

MI0011215

Description

Pristionchus pacificus ppc-mir-2249 precursor miRNA

Sequence

995 reads, 63.0 reads per million, 11 experiments

ugugguggauucGUAUUCCAUCUUCGUGAUcaauuggagaauCACGAAGAUGGAAUACGCCAUGcacccac
((.((((.((.((((((((((((((((((((.......).)))))))))))))))))))..)).)))))).

Structure

-  u    g  -u                   - aa 
 ug ggug au  cGUAUUCCAUCUUCGUGAU c  u
 || |||| ||  ||||||||||||||||||| |  u
 ac ccac UA  GCAUAAGGUAGAAGCACua g  g
c  -    G  CC                   a ag 

Annotation confidence Medium

Genome context

Unknown

Mature ppc-miR-2249-5p

• Accession: MIMAT0056960
• Description: Pristionchus pacificus ppc-miR-2249-5p mature miRNA
• Sequence: 13 - GUAUUCCAUCUUCGUGAU - 30
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2249-3p

• Accession: MIMAT0011712
• Description: Pristionchus pacificus ppc-miR-2249-3p mature miRNA
• Sequence: 43 - CACGAAGAUGGAAUACGCCAUG - 64
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074