Stem-loop ppc-mir-2238b-2

Accession

MI0011217

Description

Pristionchus pacificus ppc-mir-2238b-2 precursor miRNA

Sequence

ggaacuagucugccgacuucccgucuacuccuuucgucauugauacgaauucgAAUGACAAUCGAGUGGGUGAGaaggaagacuugcuucc
(((((.(((((.....((((.(((((((((..((.((((((((.......)).))))))))..))))))))).))))..))))).).))))

Structure

    - u     gccga    c         cu  c      -  ua 
ggaa c agucu     cuuc cgucuacuc  uu gucauu ga  c
|||| | |||||     |||| |||||||||  || |||||| ||  g
ccuu g ucaga     gaaG GUGGGUGAG  AA CAGUAA cu  a
    c u     ---ag    A         CU  -      g  ua 

Annotation confidence Not enough data

Genome context

ABKE03000059.1: 500835-500925 [+]

Mature ppc-miR-2238b

• Accession: MIMAT0011682
• Description: Pristionchus pacificus ppc-miR-2238b mature miRNA
• Sequence: 54 - AAUGACAAUCGAGUGGGUGAG - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074