Stem-loop ppc-mir-2b

Accession

MI0011226

Description

Pristionchus pacificus ppc-mir-2b precursor miRNA

Literature search

1 open access papers mention ppc-mir-2b
(6 sentences)

Sequence

gaacgaguauagaucacguagcugaccggcaguucugcgcgugaugcgugguaguuauaagcauccgUAUCACAGCCGGACUGCUGAUCugccgaucuugcuucuucu
(((.(((((.(((((.....((.((.(((((((((.((..((((((((.(((.(((...)))))))))))))).)).))))))))).)).)).)))))))))).))).

Structure

-   c     u     acgua  u  c         u  gc        u   a   a 
 gaa gagua agauc     gc ga cggcaguuc gc  gugaugcg ggu guu  
 ||| ||||| |||||     || || ||||||||| ||  |||||||| ||| ||| u
 cuu uucgu ucuag     cg CU GUCGUCAGG CG  CACUAUgc cua cga  
u   c     -     ----c  u  A         C  -A        -   -   a 

Annotation confidence Low

Genome context

ABKE03000053.1: 567859-567966 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2b

Mature ppc-miR-2b

• Accession: MIMAT0011721
• Description: Pristionchus pacificus ppc-miR-2b mature miRNA
• Sequence: 68 - UAUCACAGCCGGACUGCUGAUC - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074