Stem-loop ppc-mir-240

Accession

MI0011228

Description

Pristionchus pacificus ppc-mir-240 precursor miRNA

Literature search

3 open access papers mention ppc-mir-240
(3 sentences)

Sequence

6215 reads, 288.0 reads per million, 12 experiments

ggcgucgugugaugggauacugcccgggUGAGGUUUGACAGGUCAUUAGGcgcuguugaaccgcuguccUACUGGCCUCUCAAUCCUUAUCcggcguuucccucggacuuuccgucc
((((..((.(((.((((.((.(((.((((((((.((((.((((((.(((((((.((...)).)).).)))).)))))).)))).))))))))))))).))))))).))....)))).

Structure

-    --uc  g   u    u  u   c        U    C      U    - -  u  u 
 ggcg    gu uga ggga ac gcc gggUGAGG UUGA AGGUCA UAGG c gc gu  
 ||||    || ||| |||| || ||| |||||||| |||| |||||| |||| | || || g
 cugc    ca gcu cccu ug cgg cCUAUUCC AACU UCCGGU AUcc g cg ca  
c    cuuu  g   -    u  -   -        U    C      C    u u  c  a 

Annotation confidence High

Genome context

ABKE03000096.1: 196273-196389 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-240

Mature ppc-miR-240-5p

• Accession: MIMAT0056967
• Description: Pristionchus pacificus ppc-miR-240-5p mature miRNA
• Sequence: 29 - UGAGGUUUGACAGGUCAUUAGG - 50
• Evidence: experimental ; 454 [1]

Mature ppc-miR-240-3p

• Accession: MIMAT0011723
• Description: Pristionchus pacificus ppc-miR-240-3p mature miRNA
• Sequence: 70 - UACUGGCCUCUCAAUCCUUAUC - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074