Stem-loop ppc-mir-2270

Accession

MI0011230

Description

Pristionchus pacificus ppc-mir-2270 precursor miRNA

Sequence

cgcagauuucugagugaguccgguAAUGGUAAGAGAUUGAAGUGACUguugcacauugaaggcagccgcucaaucuccuugccauagccggcaacucagaaagacga
((....(((((((((..(.(((((.(((((((((((((((.(((.(((((..........))))).)))))))))).)))))))).)))))).)))))))))..)).

Structure

-  caga         ga u     A        -       A   A     gcac 
 cg    uuucugagu  g ccggu AUGGUAAG AGAUUGA GUG CUguu    a
 ||    |||||||||  | ||||| |||||||| ||||||| ||| |||||     
 gc    aaagacuca  c ggccg uaccguuc ucuaacu cgc gacgg    u
a  --ag         -a -     a        c       -   c     aagu 

Annotation confidence Not enough data

Genome context

ABKE03000121.1: 738553-738659 [-]

Mature ppc-miR-2270

• Accession: MIMAT0011725
• Description: Pristionchus pacificus ppc-miR-2270 mature miRNA
• Sequence: 25 - AAUGGUAAGAGAUUGAAGUGACU - 47
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074