Stem-loop ppc-mir-2271

Accession

MI0011231

Description

Pristionchus pacificus ppc-mir-2271 precursor miRNA

Sequence

13163 reads, 2319.0 reads per million, 12 experiments

gagugcacaucaaacugcaaaagccuuUGGAAGUAAGCUAUUUGGGUCUacgauuugaagcguuaAACCCGUAGCCUUACUAUCCGGaagcgugcaggaugugucgaucg
((..(((((((...(((((...((.((((((((((((((((..((((..(((........)))...)))))))).)))))).)))))).)).))))))))))))...)).

Structure

-  -gu       aaa     aaa  c      -      -    UU    -CU   auu 
 ga   gcacauc   cugca   gc uuUGGA AGUAAG CUAU  GGGU   acg   u
 ||   |||||||   |||||   || |||||| |||||| ||||  ||||   |||    
 cu   uguguag   gacgu   cg aGGCCU UCAUUC GAUG  CCCA   ugc   g
g  agc       ---     --g  a      A      C    --    Aau   gaa 

Annotation confidence High

Genome context

ABKE03000107.1: 3735376-3735485 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2271

Mature ppc-miR-2271-5p

• Accession: MIMAT0056968
• Description: Pristionchus pacificus ppc-miR-2271-5p mature miRNA
• Sequence: 28 - UGGAAGUAAGCUAUUUGGGUCU - 49
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2271-3p

• Accession: MIMAT0011726
• Description: Pristionchus pacificus ppc-miR-2271-3p mature miRNA
• Sequence: 66 - AACCCGUAGCCUUACUAUCCGG - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074