Stem-loop ppc-mir-2239-1

Accession

MI0011232

Description

Pristionchus pacificus ppc-mir-2239-1 precursor miRNA

Literature search

1 open access papers mention ppc-mir-2239-1
(1 sentences)

Sequence

245592 reads, 14407.0 reads per million, 12 experiments

gcgagacgagagcgagcgucgccuAGGUCUUUCCCCCGCUGCGAUUcagaagacacgaaUGGCAGUGUAGGAAAUAUCUUacuaaaaucggcgaaaagcgugggcgucaguuugca
((((((((...(((....(((((.((((.(((((..((((((.((((.........)))).))))))..))))).))))..........)))))....)))...))))...)))).

Structure

-    ---    aga   agcg     ---------u    C     CC      G    aga 
 gcga   gacg   gcg    ucgcc          AGGU UUUCC  CGCUGC AUUc   a
 ||||   ||||   |||    |||||          |||| |||||  |||||| ||||   g
 cguu   cugc   ugc    agcgg          UCUA AAAGG  GUGACG Uaag   a
a    uga    ggg   gaaa     cuaaaaucaU    U     AU      G    cac 

Annotation confidence High

Genome context

ABKE03000040.1: 506120-506235 [-]

Mature ppc-miR-2239-5p

• Accession: MIMAT0056969
• Description: Pristionchus pacificus ppc-miR-2239-5p mature miRNA
• Sequence: 25 - AGGUCUUUCCCCCGCUGCGAUU - 46
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2239-3p

• Accession: MIMAT0011727
• Description: Pristionchus pacificus ppc-miR-2239-3p mature miRNA
• Sequence: 60 - UGGCAGUGUAGGAAAUAUCUU - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074