Stem-loop ppc-mir-2237c

Accession

MI0011233

Description

Pristionchus pacificus ppc-mir-2237c precursor miRNA

Sequence

gguaucggugccagcUACCCGUAAUUUCUCGGACAGUuagugugccgauucgcacugucaagaaauaacggguuccuggcuaagauaacca
((((((...(((((..((((((.((((((..((((((..(((........))))))))).)))))).))))))..)))))...))).))).

Structure

-   -   ggu     cU      A      CG      ua   ugc 
 ggu auc   gccag  ACCCGU AUUUCU  GACAGU  gug   c
 ||| |||   |||||  |||||| ||||||  ||||||  |||    
 cca uag   cgguc  ugggca uaaaga  cuguca  cgc   g
a   a   aau     cu      a      -a      --   uua 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 401188-401278 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2237c

Mature ppc-miR-2237c

• Accession: MIMAT0011728
• Description: Pristionchus pacificus ppc-miR-2237c mature miRNA
• Sequence: 16 - UACCCGUAAUUUCUCGGACAGU - 37
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074