Accession
MI0011234
Description
Pristionchus pacificus
ppc-mir-2272 precursor miRNA
Sequence
8227
reads,
307.0
reads per million, 12 experiments
gcaguacccugcucgcugagccgucUAGGGUACACCCAUACUGAGCCGacgagagugcaugaagcgaucGGCUUUAUGGCGCGUACCCUAUGcggcgaggcaugagcggggauacugu
(((((((((((((((((..(((((.((((((((.((((((..(((((((((.............)).)))))))))))).).)))))))).)))))..)))..)))))))).))))))
(((((((((((((((((..(((((.((((((((.((((((..(((((((((.............)).)))))))))))).).)))))))).)))))..)))..)))))))).))))))
Structure
- -- ga c A - CU - agagu
gcagua cccugcuc gcu gccgu UAGGGUAC C CCAUA GAGCCGa cg g
|||||| |||||||| ||| ||||| |||||||| | ||||| ||||||| || c
ugucau ggggcgag cgg cggcG AUCCCAUG G GGUAU UUCGGcu gc a
a ua ag U C C -- a gaagu
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000073.1: 220023-220140 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-2272
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2272-5p
| Accession | MIMAT0011729 |
| Description | Pristionchus pacificus ppc-miR-2272-5p mature miRNA |
| Sequence | 26 - UAGGGUACACCCAUACUGAGCCG - 48 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2272-3p
| Accession | MIMAT0056971 |
| Description | Pristionchus pacificus ppc-miR-2272-3p mature miRNA |
| Sequence | 70 - GGCUUUAUGGCGCGUACCCUAUG - 92 |
| Evidence |
experimental
454 [1] |
References
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