Stem-loop ppc-mir-2273

Accession

MI0011235

Description

Pristionchus pacificus ppc-mir-2273 precursor miRNA

Sequence

uucucaucgauugaucgucUCUCGAAAGCGGCACAUGCCAUCCgaauuacauagugaugaugacauguccccguucgagagaugcgcucucgaguagaa
.(((..((((..(..((((((((((..((((.(((((.((((...(((((...))))))))).)))))..))))))))))))))..)..))))..))).

Structure

u   ca    uu au          AA    -C     C    Cga     a 
 ucu  ucga  g  cgucUCUCGA  GCGG  ACAUG CAUC   auuac  
 |||  ||||  |  ||||||||||  ||||  ||||| ||||   ||||| u
 aga  agcu  c  guagagagcu  ugcc  uguac guag   uagug  
a   ug    cu gc          --    cc     a    ---     a 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 220330-220428 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-2273

Mature ppc-miR-2273

• Accession: MIMAT0011730
• Description: Pristionchus pacificus ppc-miR-2273 mature miRNA
• Sequence: 20 - UCUCGAAAGCGGCACAUGCCAUCC - 43
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074