Accession
MI0011242
Description
Pristionchus pacificus
ppc-mir-2233 precursor miRNA
Sequence
23970
reads,
4852.0
reads per million, 12 experiments
aaugagggagugauugaacACGAUGACCGCUCGACGGGAGCauccauugcgagauugCACCCGUAGUCCGUUAUCGUCUucaaccaacuccaaucucau
.(((((((((((.(((((.((((((((.(((..(((((.(((((........)).))).))))))))..)))))))).))))).).)))))...)))))
.(((((((((((.(((((.((((((((.(((..(((((.(((((........)).))).))))))))..)))))))).))))).).)))))...)))))
Structure
a --- - a c -C CG A - cau augag ggagu g uugaa ACGAUGAC GCU ACGGG GCa uc u ||||| ||||| | ||||| |||||||| ||| ||||| ||| || uacuc ccuca c aacuU UGCUAUUG UGA UGCCC Cgu ag g - uaa a c C CC -- A u agc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000007.1: 1081159-1081257 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-2233
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2233-5p
| Accession | MIMAT0056976 |
| Description | Pristionchus pacificus ppc-miR-2233-5p mature miRNA |
| Sequence | 20 - ACGAUGACCGCUCGACGGGAGC - 41 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2233-3p
| Accession | MIMAT0011734 |
| Description | Pristionchus pacificus ppc-miR-2233-3p mature miRNA |
| Sequence | 58 - CACCCGUAGUCCGUUAUCGUCU - 79 |
| Evidence |
experimental
454 [1] |
References
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