Stem-loop ppc-mir-2241a-1

Accession

MI0011246

Description

Pristionchus pacificus ppc-mir-2241a-1 precursor miRNA

Sequence

auucgauacgccucugaucuucaggaucccugucugaacaccgaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggccucgaauc
((((((...(((.((((((((.((((..(((...(((((((((....)).)))))))..)))..)))).))))))))))).)))))).

Structure

-      uac   u        c    uc   guc       -  a 
 auucga   gcc cugaucuu agga  ccu   ugaacac cg a
 ||||||   ||| |||||||| ||||  |||   ||||||| ||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug gu a
c      --c   -        C    UA   -AC       a  u 

Annotation confidence Low

Genome context

ABKE03000012.1: 4725724-4725811 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-2241a-1

Mature ppc-miR-2241a

• Accession: MIMAT0011731
• Description: Pristionchus pacificus ppc-miR-2241a mature miRNA
• Sequence: 54 - UUCGCAAGGAUUCCUCAAGAUC - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074