Stem-loop osa-MIR2118a

Accession

MI0011251

Description

Oryza sativa osa-MIR2118a precursor miRNA

Literature search

30 open access papers mention osa-MIR2118a
(164 sentences)

Sequence

1115 reads, 12.0 reads per million, 76 experiments

gggaagaggaagaaagagaggcuccaagaguaguaGGACUGGGAACAUAUGAGAAAGcaugagcucuauccaucuauccauccccucccauucgcuagaauguugcagguggagauuucgcucuuauguuUUCUCGAUGCCUCCCAUUCCUAUcguucuuggaacuuccuuccucuucc
.(((((((((((.....((((.((((((((..((((((.(((((.(((.(((((((((((((((...(((......((((((......(((((....))))).....)))))))))...))))..))))))))))))))..))))).))))))..)))))))).)))))))))))))))

Structure

g           aaaga    c        ua      C     -A   A           --    ucu   caucua      cccucc     g 
 ggaagaggaag     gagg uccaagag  guaGGA UGGGA  CAU UGAGAAAGcau  gagc   auc      uccauc      cauuc c
 |||||||||||     |||| ||||||||  |||||| |||||  ||| |||||||||||  ||||   |||      ||||||      |||||  
 ccuucuccuuc     cuuc agguucuu  UAUCCU ACCCU  GUA GCUCUUuugua  cucg   uag      aggugg      guaag u
-           -----    a        gc      U     CC   -           uu    cuu   ------      -acguu     a 

Annotation confidence High

Genome context

4: 21642923-21643101 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from osa-MIR2118a

Mature osa-miR2118a-5p

• Accession: MIMAT0056113
• Description: Oryza sativa osa-miR2118a-5p mature miRNA
• Sequence: 36 - GGACUGGGAACAUAUGAGAAAG - 57
• Evidence: experimental ; unknown

Mature osa-miR2118a-3p

• Accession: MIMAT0011740
• Description: Oryza sativa osa-miR2118a-3p mature miRNA
• Sequence: 131 - UUCUCGAUGCCUCCCAUUCCUAU - 153
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440