Stem-loop osa-MIR2118b

Accession

MI0011252

Description

Oryza sativa osa-MIR2118b precursor miRNA

Literature search

28 open access papers mention osa-MIR2118b
(164 sentences)

Sequence

22554 reads, 131.0 reads per million, 121 experiments

augagcgaggaagaggaagaaagagguagucUAAGAGCAGUGGGAAUGGGAAcauagaggaaaaaugagcucucaguguucacuucuggaaguggagguggauauuugucucaguauuuUUCCCGAUGCCUCCCAUUCCUAUcguucuuaggugcuccuuccucuuccuuucagcucau
(((((((((((((((((((...(((.((.(((((((((.((((((((((((.(((.(.(((((((((((..(..((((((((((((((....)))))))))))))).).))))...)))))))).)))..)))))))))))).)))))))))))))))))))))))))))...))))))

Structure

      ---             aaa   g  g         A            -A   a a       ---    cu uc              g 
augagc   gaggaagaggaag   gag ua ucUAAGAGC GUGGGAAUGGGA  cau g ggaaaaa   ugag  c  aguguucacuucug a
||||||   |||||||||||||   ||| || ||||||||| ||||||||||||  ||| | |||||||   ||||  |  ||||||||||||||  
uacucg   uuccuucuccuuc   cuc gu ggauucuug UAUCCUUACCCU  GUA C CCUUuuu   acuc  g  uuauagguggaggu a
      acu             ---   -  -         c            CC   G -       aug    -u -u              g 

Annotation confidence Medium

Genome context

4: 21645285-21645463 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from osa-MIR2118b

Mature osa-miR2118b-5p

• Accession: MIMAT0056114
• Description: Oryza sativa osa-miR2118b-5p mature miRNA
• Sequence: 32 - UAAGAGCAGUGGGAAUGGGAA - 52
• Evidence: experimental ; unknown

Mature osa-miR2118b-3p

• Accession: MIMAT0011741
• Description: Oryza sativa osa-miR2118b-3p mature miRNA
• Sequence: 120 - UUCCCGAUGCCUCCCAUUCCUAU - 142
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440